PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G295200.1.p
Common NameGLYMA_10G295200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 326aa    MW: 35159.2 Da    PI: 10.509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G295200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05202225123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+Cp+Cg +F ++  +  H ++ H
  Glyma.10G295200.1.p 202 YTCPKCGHVFETSQRFAAHVSSsH 225
                          9******************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.494202230IPR007087Zinc finger, C2H2
SMARTSM003550.0069202225IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204225IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALNSPNSSN FSTALSLGLA SNTNEALTVK GMGQLGLNQR ITKVRKSSLT AKERSCLVHG  60
GSENNTESII RASQIVRAQL VHAVSSTPSP VSSNNVVVVV ADKKKAIEIL QAKLLCASAF  120
APKTSPTSLR PISLSHRLTS TPPLKTRRGF LNDDDFAYSL CPSPLSVCFP HETSTLQNHV  180
RGGDTKYDGR MHSYPYKKNG PYTCPKCGHV FETSQRFAAH VSSSHYKYET KSERKKRLMA  240
KIRKRNLRIE WVSGGLTVVP DDAPPTSAFA YSARNNNNVA PPPPVRVVKV EGQSGMELQL  300
APPPGWEKLT AGGGAVKIKL EPVAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.175340.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00523DAPTransfer from AT5G22990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G295200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352970.0AC235297.1 Glycine max strain Williams 82 clone GM_WBb0060P19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304579.20.0uncharacterized protein LOC100788426
TrEMBLI1LFI10.0I1LFI1_SOYBN; Uncharacterized protein
STRINGGLYMA10G44160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674277
Representative plantOGRP1013833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22990.14e-23C2H2-like zinc finger protein