PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G298700.1.p

Common Name

GLYMA_10G298700, LOC100797767

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 326aa MW: 36543.9 Da PI: 6.8041

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G298700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.1	2.7e-29	30	124	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li+++r+ e+++rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ Glyma.10G298700.1.p 30 RWTRQEILVLIQGKRDAENKFRRGRtaglpfgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVM 119 8********************97778888888*******************************************999999999 PP trihelix 82 fdqle 86 ++l+ Glyma.10G298700.1.p 120 RNDLR 124 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-5	30	95	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.562	30	96	IPR017877	Myb-like domain
Pfam	PF13837	1.5E-13	30	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MALEQEGQNR NTNGVVDAGD EGGKAPRLPR WTRQEILVLI QGKRDAENKF RRGRTAGLPF 60 GSGQVEPKWA SVSSYCRKHG VNRGPVQCRK RWSNLAGDYK KIKEWESQIR EETESFWVMR 120 NDLRRERKLP GFFDKEVYDI LDSPAALALA LSSSSPPPPT TTKTITLPAE EPLPHLYDSN 180 RSAPGDGEDG LFSDFEQDEV AASSKKNKDI PAPIPISEKL YQPLLRRCQA EDVTNEKQST 240 SNPEMGSTSQ GERKRKRLAT DGEEETLQYQ LIDVLERNGK MLSAQLEAQN INFQLDREQR 300 KDHASNLVAV LDKLADALGR IADKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G298700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-145	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536818.1	0.0	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-112	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	I1LFM1	0.0	I1LFM1_SOYBN; Uncharacterized protein
STRING	GLYMA10G44620.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75
Representative plant	OGRP1747	13	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-101	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.10G298700.1.p
Entrez Gene	100797767

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]