PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G298700.2.p
Common NameGLYMA_10G298700, LOC100797767
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 234aa    MW: 26164.4 Da    PI: 8.4546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G298700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.11.3e-2930124186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                          rWt+qe+l+Li+++r+ e+++rrg+         + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++
  Glyma.10G298700.2.p  30 RWTRQEILVLIQGKRDAENKFRRGRtaglpfgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREETESFWVM 119
                          8**********************97778888888**********************************************9999999*99 PP

             trihelix  82 fdqle 86 
                           ++l+
  Glyma.10G298700.2.p 120 RNDLR 124
                          99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-53095IPR009057Homeodomain-like
PfamPF138377.3E-1430120No hitNo description
PROSITE profilePS500906.5623096IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALEQEGQNR NTNGVVDAGD EGGKAPRLPR WTRQEILVLI QGKRDAENKF RRGRTAGLPF  60
GSGQVEPKWA SVSSYCRKHG VNRGPVQCRK RWSNLAGDYK KIKEWESQIR EETESFWVMR  120
NDLRRERKLP GFFDKEVYDI LDSPAALALA LSSSSPPPPT TTKTITLPAE EPLPHLYDSN  180
RSAPGDGEDG LFSDFEQDEV AASSKKNKDI PAPIPISEKL YQPLLRRCQA EVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G298700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-145AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536818.11e-172trihelix transcription factor ASR3
SwissprotQ8VZ209e-78ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0R0IBE41e-171A0A0R0IBE4_SOYBN; Uncharacterized protein
TrEMBLI1LFM11e-171I1LFM1_SOYBN; Uncharacterized protein
STRINGGLYMA10G44620.11e-171(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-78Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]