PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G021200.1.p

Common Name

GLYMA_11G021200, LOC102669888

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 215aa MW: 24138.1 Da PI: 8.367

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G021200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	89.6	2.5e-28	123	179	2	57
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 +D ++WrKYGqK++kgs +prsYYrC+s+ gC ++k+vers+ dp v+++tY+ eH Glyma.11G021200.1.p 123 SDPWAWRKYGQKPIKGSAYPRSYYRCSSSkGCLARKHVERSQLDPGVLIVTYTAEHS 179 799**********************998************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-27	108	183	IPR003657	WRKY domain
PROSITE profile	PS50811	30.205	117	183	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-24	118	183	IPR003657	WRKY domain
SMART	SM00774	1.1E-32	122	182	IPR003657	WRKY domain
Pfam	PF03106	5.6E-23	124	179	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MDWDLQAIVG CTKAPAATVM DNSHLMFFQH LCPEEQDDLL FNFQEFSETT TVVDELEELY 60 KPFYPPHVHV DNNNPLPIVA NSLPIPDEEV KELKPSHKAA SRCKKSKKQQ KNKRVVTAAD 120 GVSDPWAWRK YGQKPIKGSA YPRSYYRCSS SKGCLARKHV ERSQLDPGVL IVTYTAEHSD 180 PHPTCKNSQQ RNNSSTTTIA PATPRTHDGG GYRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-17	109	184	2	80	Disease resistance protein RRS1
5w3x_D	1e-17	109	184	2	80	Disease resistance protein RRS1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G021200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-63	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006591525.1	1e-162	WRKY transcription factor 22
Refseq	XP_028187490.1	1e-162	WRKY transcription factor 22-like
TrEMBL	K7LMM3	1e-161	K7LMM3_SOYBN; Uncharacterized protein
STRING	GLYMA11G02361.1	1e-162	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6217	31	50
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-32	WRKY DNA-binding protein 27

Link Out ? help Back to Top
Phytozome	Glyma.11G021200.1.p
Entrez Gene	102669888