PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G043700.1.p
Common NameGLYMA_11G043700, LOC100791810
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 350aa    MW: 38987.8 Da    PI: 6.2893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G043700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.6e-12178225355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          + h ++Er+RR+++ ++f  L  +lP +     kK++Ka++L  A++Y+k+Lq
  Glyma.11G043700.1.p 178 QEHVIAERKRREKLSQRFIALSAILPGL-----KKMDKASVLGDAIKYVKQLQ 225
                          6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.542175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10178225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-17179241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16179236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-13180229No hitNo description
SMARTSM003534.3E-15181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MMEIANHYYL PELGIEDPTL FDQYPMDSFA CPLDDFDFES FSGSPESNSS YQFNSESTPN  60
CFPAESPDQS FVPARPTKRL KTFNTSNTCA SDIISHKVSA SSSSQVISFD HFNAPSDASS  120
LQFHRNLDFD VKPKIEKASS GNMDFAAFVS HGSYVDKTFL SSDTNQVGIT SRNPIQAQEH  180
VIAERKRREK LSQRFIALSA ILPGLKKMDK ASVLGDAIKY VKQLQERVQT LEEQAAKRTA  240
GSRVLVKRSI LFADDENSDS HCEHSLPEIE VRVSGKDVLI RTQCDKHSGH AAMILSELEK  300
LHFIVQSSSF LPFGNNNTDV TIIAQMNKEN CMTAKDLLGR LRQALKQFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13180234963Transcription factor MYC2
5gnj_B1e-13180234963Transcription factor MYC2
5gnj_E1e-13180234963Transcription factor MYC2
5gnj_F1e-13180234963Transcription factor MYC2
5gnj_G1e-13180234963Transcription factor MYC2
5gnj_I1e-13180234963Transcription factor MYC2
5gnj_M1e-13180234963Transcription factor MYC2
5gnj_N1e-13180234963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188ERKRRE
2184189RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G043700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538782.10.0transcription factor bHLH25
RefseqXP_028188290.10.0transcription factor bHLH25-like
TrEMBLA0A445HXD20.0A0A445HXD2_GLYSO; Transcription factor bHLH25 isoform B
TrEMBLI1LH230.0I1LH23_SOYBN; Uncharacterized protein
STRINGGLYMA11G04690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-60bHLH family protein