PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G054600.3.p
Common NameGlyma11g05810.1, LOC100793754
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 223aa    MW: 24643.7 Da    PI: 6.3007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G054600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-073312255
                         HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          L+ l+P++      K +Ka++L +A+eY+k+Lq
  Glyma.11G054600.3.p  3 ALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                         699999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.928130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-8135No hitNo description
SuperFamilySSF474591.31E-10241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGLSLHPMCF PEGLQPLQLS  60
QMGMELSERN RFTSLNMSAT LPLHQDNNPL HYASNLPNKH NLPNQPSVPY PPYIDNPETS  120
FGLEPRIQTD MKPLQHKGGS SEPIRGEDIL QHQQSSGIHS DANTLGGSQV VKEFESGTRL  180
SFPFDTQACE PKDNSNSSQP CIGGRDHSGV IIRNSETNIV GR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241010.0cotyledon| flower| hypocotyl| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G054600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311170.0KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539355.11e-164transcription factor SPATULA isoform X1
RefseqXP_028192096.11e-164transcription factor SPATULA-like isoform X1
TrEMBLA0A445HXJ31e-163A0A445HXJ3_GLYSO; Transcription factor SPATULA isoform A
TrEMBLI1LHD31e-163I1LHD3_SOYBN; BHLH transcription factor (Fragment)
STRINGGLYMA11G05810.11e-164(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.15e-29bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]