PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G065200.1.p
Common NameGLYMA_11G065200, LOC100784206
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 517aa    MW: 57496.4 Da    PI: 5.7926
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G065200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.71.7e-851595152374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L+++A+++++++l+ aq +L+rl+++ +sp g+p+qR+a+yf+eAL++ l++      +  +p+ +s  + ++++  +k+fs +sPi
  Glyma.11G065200.1.p 159 IEELIRAADCFDTKQLHVAQVILERLNQRlRSPVGKPLQRAAFYFKEALQSLLSG------SNRTPRISSLVEIVHSIRTFKAFSGISPI 242
                          679*************************99*************************......5556666666678888999999******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          + fs +t+Nq +l+ +  ++ +H+iDfdi+ G+Q+++L++++a++++++p lRiT+v+++e   + e   ++++La+fA el+++++ ++
  Glyma.11G065200.1.p 243 PMFSIFTTNQIVLDHA-ACSFMHVIDFDIGLGIQYASLMKEIAEKAAESPVLRITAVVPEE--YAVESTLVHDNLAQFALELRIRVQVEF 329
                          *************986.5899**************************************66..8999999******************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerflealeyys 265
                          ++ +++e+l++++ ++  gE++ V l+ +++  l   ++ +    ++L  v+++sP +vv+v+ e     a  +++sF ++++++leyys
  Glyma.11G065200.1.p 330 VALRTFENLSFKSVKFVDGENTTVLLSPAIFGHL---GNAA----AFLADVRRISPSMVVFVDGEgwaetATASAASFRRGVVSSLEYYS 412
                          9999***************************999...4444....6*****************9976553444777************** PP

                 GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          ++++sl +++++   e+ + +E + lg++i  +v  + +       +l  Wre++  aG++pv+ls++a  qa++ll+k + +g++v  +
  Glyma.11G065200.1.p 413 MMLESLdASTVGGGGEWVRRIEMMQLGPKILAAVESAWR-------KLPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVARR 495
                          ******778889999***************999876555.......5******************************************* PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +++lvl W+dr++v++SaWr
  Glyma.11G065200.1.p 496 QNELVLFWHDRAMVATSAWR 515
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.869132495IPR005202Transcription factor GRAS
PfamPF035145.8E-83159515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MRVPVPSSPQ ANPKPTNNVV RTIALPNLNT TTTTTTTSLC YEPTSVLDLC RSPSPSPGTE  60
KPTNDHAVLD LDDHALHNLD WDSIMKDLGL HDDSATPVLK TFLHPDDDNN NPSCDDFTPF  120
DHALEFTSLS DIYSNQNLAF DFNHLPHDFN HHLNGFDFIE ELIRAADCFD TKQLHVAQVI  180
LERLNQRLRS PVGKPLQRAA FYFKEALQSL LSGSNRTPRI SSLVEIVHSI RTFKAFSGIS  240
PIPMFSIFTT NQIVLDHAAC SFMHVIDFDI GLGIQYASLM KEIAEKAAES PVLRITAVVP  300
EEYAVESTLV HDNLAQFALE LRIRVQVEFV ALRTFENLSF KSVKFVDGEN TTVLLSPAIF  360
GHLGNAAAFL ADVRRISPSM VVFVDGEGWA ETATASAASF RRGVVSSLEY YSMMLESLDA  420
STVGGGGEWV RRIEMMQLGP KILAAVESAW RKLPPWREAF YGAGMRPVQL SQFADFQAEC  480
LLAKSQIRGF HVARRQNELV LFWHDRAMVA TSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2116451425378Protein SCARECROW
5b3h_A4e-2116451424377Protein SCARECROW
5b3h_D4e-2116451424377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.589930.0seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G065200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354170.0AC235417.1 Glycine max strain Williams 82 clone GM_WBb0135A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538842.10.0scarecrow-like protein 15
RefseqXP_028187156.10.0scarecrow-like protein 15
SwissprotO232101e-165SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A445HXV90.0A0A445HXV9_GLYSO; Scarecrow-like protein 15
TrEMBLI1LHP00.0I1LHP0_SOYBN; Uncharacterized protein
STRINGGLYMA11G06980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-158GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]