PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G108400.1.p
Common NameGLYMA_11G108400, LOC100781707
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 341aa    MW: 38308.9 Da    PI: 6.8551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G108400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191865148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  Glyma.11G108400.1.p 18 KGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWSNYL 65
                         79********************************************97 PP
2Myb_DNA-binding54.62.4e-1771116148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++l+++++  lG++ W++Ia +++ gRt++++k++w+++l
  Glyma.11G108400.1.p  71 RGKFSEEEQQLIINLHSVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 116
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-251168IPR009057Homeodomain-like
PROSITE profilePS5129418.681365IPR017930Myb domain
SuperFamilySSF466893.95E-3215112IPR009057Homeodomain-like
SMARTSM007171.9E-151767IPR001005SANT/Myb domain
PfamPF002492.0E-171865IPR001005SANT/Myb domain
CDDcd001675.27E-122065No hitNo description
PROSITE profilePS5129427.1366120IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2769120IPR009057Homeodomain-like
SMARTSM007171.9E-1670118IPR001005SANT/Myb domain
PfamPF002494.8E-1671116IPR001005SANT/Myb domain
CDDcd001673.26E-1273116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMGRTPFACS SDENGLKKGP WTPEEDRILV DYIQKHGHGS WRALPKLAGL NRCGKSCRLR  60
WSNYLRPDIK RGKFSEEEQQ LIINLHSVLG NKWSAIAGHL PGRTDNEIKN FWNTHLKKKL  120
LQMGLDPVTH RPRSDHLNLL SNLQQLLAAT NIVSNILTNT WDSTHNALRL QSDAKLQLLQ  180
NILQVPTSNL DLLNPFGPSD GFLNEVLGLN QSNKLQNLYN NGSSTDGFPS QNQPNIQSFE  240
APHQQQTLPN GGSINRSSMK SEKLDAPYSS STAFVNSLPN LVSASPEYCS THVMQMENKV  300
NPNEFSDPSS TSTNNFEMWG DFMYEEVSDA YWKDLKIDQE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29161205108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.113430.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G108400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1086510.0AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538990.20.0transcription factor MYB53
RefseqXP_028188644.10.0transcription factor MYB53-like
SwissprotQ9SBF35e-83MYB92_ARATH; Transcription factor MYB92
TrEMBLI1LJ270.0I1LJ27_SOYBN; Uncharacterized protein
STRINGGLYMA11G11570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-90myb domain protein 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]