PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G117100.3.p
Common NameGLYMA_11G117100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 397aa    MW: 43288.9 Da    PI: 8.0417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G117100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.1e-09221268455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.11G117100.3.p 221 SHSLAERVRREKISERMKYLQDLVPGC----NKVAGKAGMLDEIINYVQSLQ 268
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.13E-10215272No hitNo description
SuperFamilySSF474597.46E-17215286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17217284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6221268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-10223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLHCLNTSGN LGATCSDMTV LERQREATIK WQQHLQNNQP PYLTDFNVNV NAVFSSSSSS  60
SQSQGLVMNI CADSALGEVL THSVKPDPGV WPEFDAGFGS SSGFLPTISP TCSRGGDLVS  120
PKENMASAKE NTKKRKPQNS KVVAASDNKQ DKRVKASGEE GESKVTEQTS NKNGKSNANK  180
NNNRETTSAE TSKDNSKGSE VQNQKPEYIH VRARRGQATD SHSLAERVRR EKISERMKYL  240
QDLVPGCNKV AGKAGMLDEI INYVQSLQRQ VEFLSMKLAA VNPRLDFNLD ELFTKEVFPS  300
CAQSFPNIGM PLDMSMSNNP SYLPFNSAQQ LVSCCGGLIN NMGISPPNMG LRRNISTSPV  360
PLPETFLDSS CFTVGFFTLS CVCNVLLMIS LVQILI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362340.0cotyledon| hypocotyl| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G117100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983030.0BT098303.1 Soybean clone JCVI-FLGm-23G1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340509.10.0basic helix-loop-helix transcription activator CIB1
RefseqXP_028187332.10.0transcription factor HBI1-like isoform X2
SwissprotQ9CAA91e-54BH049_ARATH; Transcription factor bHLH49
TrEMBLI1LJC70.0I1LJC7_SOYBN; Uncharacterized protein
STRINGGLYMA11G12450.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-55cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]