PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124200.1.p
Common NameGLYMA_11G124200, Glyma11g13220, LOC100815555
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 435aa    MW: 50059.4 Da    PI: 9.7686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.36.6e-14401201298
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++l +p +f+++ +++       +l  +sg +W+v++   kk++ +++ +GW++F k+n +   +f++F+++g ++f  +v++f 
  Glyma.11G124200.1.p  40 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 120
                          456799******655544..4446899************..********************************999999..999986 PP
2B364.91.2e-20335429499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           l+++ +l++++l +  +fa+++  + e   ++ l +++g+sWev++ y +++++    +++GW++Fv++n+L  gD+++F++++ ++++
  Glyma.11G124200.1.p 335 HLLTKCNLERCILLIAAEFARKYI-P-EALEQIYLWNSEGKSWEVRVHYFRNRNTwyAAFKRGWERFVRDNKLMKGDTCIFEVEE-EQGH 421
                          567788999**************4.2.33448***************99555555478899*********************755.9999 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v++fr+
  Glyma.11G124200.1.p 422 WSVHIFRT 429
                          9****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.25229122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.7E-1829121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1729122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-1234119No hitNo description
SMARTSM010193.1E-1334122IPR003340B3 DNA binding domain
PfamPF023626.2E-1140120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.8E-24325429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-21326430IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916332430IPR003340B3 DNA binding domain
SMARTSM010195.8E-13332430IPR003340B3 DNA binding domain
PfamPF023621.2E-17335429IPR003340B3 DNA binding domain
CDDcd100177.25E-17337428No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS  60
NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG  120
GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ  180
RKTFVGSSHL HESNSYKKDL PSSNKGTLSK GCEIKKTRQE QAATPSFLRP NKIKQRKTSA  240
RSSNLNESKS CQEGQERVAT LSWARTNNYN STQRKTSAGS SHLHESNSSK EDLPFSNKAS  300
LSKDFPKPQS SINIECSEAC KLAESFTSRN PHWKHLLTKC NLERCILLIA AEFARKYIPE  360
ALEQIYLWNS EGKSWEVRVH YFRNRNTWYA AFKRGWERFV RDNKLMKGDT CIFEVEEEQG  420
HWSVHIFRTG CAPH*
Function -- GeneRIF ? help Back to Top
  1. Glyma11g13220, a homolog of Arabidopsis VRN1, is a functional protein, which is responsive to photoperiod and low temperature in soybean, and may participate in the vernalization pathway in Arabidopsis and help regulate flowering time.
    [PMID: 26420429]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304570.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_028186692.10.0B3 domain-containing protein Os11g0197600-like isoform X1
TrEMBLA0A445I0L80.0A0A445I0L8_GLYSO; B3 domain-containing protein isoform A
TrEMBLI1LJK80.0I1LJK8_SOYBN; Glyma11g13220
STRINGGLYMA11G13220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.12e-12B3 family protein
Publications ? help Back to Top
  1. L
    Glyma11g13220, a homolog of the vernalization pathway gene VERNALIZATION 1 from soybean [Glycine max (L.) Merr.], promotes flowering in Arabidopsis thaliana.
    BMC Plant Biol., 2015. 15: p. 232
    [PMID:26420429]