PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G131200.1.p
Common NameGLYMA_11G131200, Glyma11g13960.1, LOC100789855
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 419aa    MW: 45976.7 Da    PI: 6.3537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G131200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13352397655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  Glyma.11G131200.1.p 352 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 397
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.42E-17349408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.22E-14350401No hitNo description
Gene3DG3DSA:4.10.280.106.1E-16351408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9352397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14352402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESDLQQHPP MFLDHHQQQM NSGLTRYRSA PSSYFSSIID HEFYEHVFNR PSSPETERML  60
TRFVNSLGGG DADAEDSLAT TQNPPTVVAV KEEVNQQPPD VTSMNNEPLV LQQQQQQQQQ  120
QQQSNNMYNY GSSGTQNFYQ STGRPPLPNQ MKTGHGSSSN LIRHGSSPAG LFSNINIDIT  180
GYAAVVRGMG TMGAAANNTS EEANFSPATR MKNNAPNFSS GLMSSRAEVG NKSNTQNNNA  240
ENEGFAESQG NEFIPAGFPV GPWNDSAIMS DNVTGLKRFR DEDVKPFSGG LNAPESQNET  300
GGQQPSSSAL AHQLSLPNTS AEMAAIEKFL QLSDSVPCKI RAKRGCATHP RSIAERVRRT  360
KISERMRKLQ DLVPNMDKQT NTADMLDLAV EYIKDLQNQV QTLSDNRAKC TCSHKKQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.320360.0hypocotyl| leaf| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G131200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311180.0KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537954.10.0transcription factor bHLH122
RefseqXP_006590956.10.0transcription factor bHLH122
RefseqXP_006590957.10.0transcription factor bHLH122
RefseqXP_014619508.10.0transcription factor bHLH122
RefseqXP_028190044.10.0transcription factor bHLH122-like
RefseqXP_028190045.10.0transcription factor bHLH122-like
RefseqXP_028190046.10.0transcription factor bHLH122-like
RefseqXP_028190047.10.0transcription factor bHLH122-like
TrEMBLA0A445I1E20.0A0A445I1E2_GLYSO; Transcription factor bHLH122 isoform A
TrEMBLI1LJT50.0I1LJT5_SOYBN; BHLH transcription factor
STRINGGLYMA11G13960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.18e-83bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]