PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G142900.2.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 195aa    MW: 22151.5 Da    PI: 4.7932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G142900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.56.4e-132341448
                         HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         d++ ++G++ W++Iar+++ gRt++++k++w++++
  Glyma.11G142900.2.p  2 DLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 34
                         899******.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.549138IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-15235IPR009057Homeodomain-like
SuperFamilySSF466891.4E-9240IPR009057Homeodomain-like
PfamPF002491.8E-10233IPR001005SANT/Myb domain
SMARTSM007170.0055236IPR001005SANT/Myb domain
CDDcd001673.79E-8234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDLHSKWGNR WSRIARRLPG RTDNEIKNYW RTHMRKKKAQ EKKHASAASP VSSSCQSSLS  60
SNNHVVDSHA SKEVGEESCY DTGGYDDGMM MGLIGGEKGY SMDDIWKDIM SEEENNIYNN  120
NLQPVYEGHS EEGCNFSCPP PPMIMPSPPS WDQYNISSQP LWVMDEEESN KMLFPTLSDQ  180
YFPYYEQGNA FLTG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.295160.0cotyledon| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G142900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0972741e-166BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980194.11e-144transcription factor MYB59
RefseqXP_028191333.11e-144transcription factor MYB59-like
TrEMBLA0A0R0HH721e-143A0A0R0HH72_SOYBN; Uncharacterized protein
TrEMBLA0A445I1H21e-144A0A445I1H2_GLYSO; Transcription factor MYB48 isoform A
TrEMBLI1LK651e-144I1LK65_SOYBN; Uncharacterized protein
STRINGGLYMA11G15180.61e-143(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.12e-24myb domain protein 59