PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G145400.2.p
Common NameGLYMA_11G145400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 225aa    MW: 25416.5 Da    PI: 10.9873
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G145400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18153186134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Glyma.11G145400.2.p 153 CLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 186
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-16147197IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.675147183IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.66E-15149209No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14151184IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.34E-15152199No hitNo description
PROSITE patternPS003440153178IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16153186IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0016021Cellular Componentintegral component of membrane
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEGTFIELK LAKTVRPAYG KTIPVQKVSL KGKDLLQFQT NSPVSVFESS SSSPSVENSN  60
FELPVIPTKR PRTKRRRLSN ISLLYSIPFI LTSPAFQKFQ RMDFSKSDIQ TQPSGELLCK  120
FKKKQRKKDI PLPTNKIEMK RSSSQESVAP RKCLHCEVTK TPQWREGPMG PKTLCNACGV  180
RYRSGRLFAE YRPASSPTFV ASLHSNSHKK VLEIRNRATQ VTVR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17377KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.165560.0cotyledon| leaf| meristem| root| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G145400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984950.0BT098495.1 Soybean clone JCVI-FLGm-12F13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538192.11e-155GATA transcription factor 11
RefseqXP_014619533.11e-155GATA transcription factor 11
TrEMBLA0A0R0HNA21e-163A0A0R0HNA2_SOYBN; Uncharacterized protein
STRINGGLYMA11G20480.11e-154(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-39GATA family protein