PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G148000.1.p
Common NameGLYMA_11G148000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 235aa    MW: 26567.4 Da    PI: 10.636
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G148000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC30.29.8e-101342161799
                NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                          k + +P+ ri+ ++k ++   ++s ea   + +a e f+ +++  ++  +   +++ l    +a +v++   +dfl d vp+ 
  Glyma.11G148000.1.p 134 KMNVFPMNRIRTMIKGEDPDMRVSQEALLAINNAVEKFLEQFSQEAYAFCVRDRKKCLSYDHLAHVVSKQRRYDFLSDFVPER 216
                          67789**********87666789*********************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008082.7E-14138200IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-22138215IPR009072Histone-fold
SuperFamilySSF471139.63E-16138214IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTSSNSPKPE KKITKNTEIS KTQKKKTKNA ETPKTEKKKT KNAETPKTEK KKTKNAETPK  60
TEKKKNAEIP KIEKKKTKSA EIPLTDGKTK RDREIAKEEN KKKTKKPKLS NGTSKQRDEG  120
SKKGVAEGKG EEGKMNVFPM NRIRTMIKGE DPDMRVSQEA LLAINNAVEK FLEQFSQEAY  180
AFCVRDRKKC LSYDHLAHVV SKQRRYDFLS DFVPERVKAE DALRERSAAG TGGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.130830.0cotyledon| flower| somatic embryo| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G148000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939020.0BT093902.1 Soybean clone JCVI-FLGm-14G24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242442.21e-168uncharacterized protein LOC100793738
RefseqXP_028187896.11e-168DNA polymerase epsilon subunit C-like isoform X1
TrEMBLA0A445I4P41e-166A0A445I4P4_GLYSO; Uncharacterized protein
TrEMBLI1LL701e-166I1LL70_SOYBN; Uncharacterized protein
STRINGGLYMA11G20740.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Representative plantOGRP86701112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.12e-26nuclear factor Y, subunit C10