PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G159700.1.p
Common NameGLYMA_11G159700, LOC100781335
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19523.8 Da    PI: 9.4895
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G159700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.9e-141151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+n ++r+  + kR+ng+lKK  E+ +LC+++++ ii+ ++
  Glyma.11G159700.1.p 11 ISNPRKRKAALKKRKNGLLKKIDEITTLCGIQACAIIYTPD 51
                         99************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.7E-18180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.166149IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-16160IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-6323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-131151IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MARKKVDFTY ISNPRKRKAA LKKRKNGLLK KIDEITTLCG IQACAIIYTP DEPEPEVWPS  60
NQGVESVIFN FRGVSESARN KRMFCQESLL MKNITLAQGQ LKKLRDENRK KEIGLFLCQY  120
FAGGNNLGKC NIIDLNDITF LADKKLEEIT KKIEMLLVQE VTPATENEDK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDFTYISNPRKRKAALKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G159700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539310.11e-123agamous-like MADS-box protein AGL80
RefseqXP_028186387.11e-123agamous-like MADS-box protein AGL80
TrEMBLA0A0B2QM371e-122A0A0B2QM37_GLYSO; Agamous-like MADS-box protein AGL80
TrEMBLK7LQS01e-122K7LQS0_SOYBN; Uncharacterized protein
STRINGGLYMA11G26120.21e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3597122
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-34AGAMOUS-like 80