PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G182000.1.p
Common NameGLYMA_11G182000, LOC100781321
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 247aa    MW: 28409.7 Da    PI: 6.5176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G182000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.67.9e-4351372128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                          ppGfrF Pt+eelv +yL++k+eg++  + +++vi+ +d + vePw+Lp+     +++++++w+fFs+ ++++a+g r++r+t+ gyWka
  Glyma.11G182000.1.p   5 PPGFRFFPTEEELVGFYLHNKLEGQRnaIAIDRVIPVIDFNGVEPWNLPTfageLCRGDTEQWFFFSPGQEREARGGRPSRTTACGYWKA 94 
                          8************************977777789***************546654445777***************************** PP

                  NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          tg+   v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+
  Glyma.11G182000.1.p  95 TGSPGYVYSSDNKVIGVKKSMVFYKGKAPMGRKTKWKMNEYRA 137
                          *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-463158IPR003441NAC domain
PROSITE profilePS5100545.2174160IPR003441NAC domain
PfamPF023652.0E-235136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEDHPPGFRF FPTEEELVGF YLHNKLEGQR NAIAIDRVIP VIDFNGVEPW NLPTFAGELC  60
RGDTEQWFFF SPGQEREARG GRPSRTTACG YWKATGSPGY VYSSDNKVIG VKKSMVFYKG  120
KAPMGRKTKW KMNEYRAIHI PNQSTPQLRW EFSLCRVYVI SGSFRAFDRR PLEKDGSESR  180
AKVDGLCSSE ISHFEGLHGS HSQMLEVRES SSTNWDVNNN NNDKSNNEVQ LQEPLWELEW  240
EQFNWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-32515818163NO APICAL MERISTEM PROTEIN
1ut4_B9e-32515818163NO APICAL MERISTEM PROTEIN
1ut7_A9e-32515818163NO APICAL MERISTEM PROTEIN
1ut7_B9e-32515818163NO APICAL MERISTEM PROTEIN
3swm_A1e-31515821166NAC domain-containing protein 19
3swm_B1e-31515821166NAC domain-containing protein 19
3swm_C1e-31515821166NAC domain-containing protein 19
3swm_D1e-31515821166NAC domain-containing protein 19
3swp_A1e-31515821166NAC domain-containing protein 19
3swp_B1e-31515821166NAC domain-containing protein 19
3swp_C1e-31515821166NAC domain-containing protein 19
3swp_D1e-31515821166NAC domain-containing protein 19
4dul_A9e-32515818163NAC domain-containing protein 19
4dul_B9e-32515818163NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.187800.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G182000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-80AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538107.10.0NAC domain-containing protein 90
RefseqXP_028188794.10.0NAC domain-containing protein 90-like
SwissprotQ9FMR34e-82NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A445I2940.0A0A445I294_GLYSO; NAC domain-containing protein 90
TrEMBLI1LKP90.0I1LKP9_SOYBN; Uncharacterized protein
STRINGGLYMA11G18770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Representative plantOGRP22781136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-80NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]