PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G183100.1.p
Common NameGLYMA_11G183100, LOC100306382
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 162aa    MW: 17949.9 Da    PI: 4.7746
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G183100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB37.94.3e-12599695
                NF-YB  6 rflPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                         ++lP + v r++k  l    +++   +skda     e    fi ++++ a+d c++ kr+ in +d++ al +  f +++ plk+ l+++r+
  Glyma.11G183100.1.p  5 EELPRSIVRRVVKDKLSrcsEDGeiSVSKDALLAFSESGRIFIHYLSATANDICKESKRQIINVEDVFKALEETEFPEFLRPLKASLEEFRK 96
                         578889999999998862223341157899999**********************************************************8 PP

                NF-YB 93 leg 95
                          ++
  Glyma.11G183100.1.p 97 KNA 99
                         765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.6E-313132IPR009072Histone-fold
PfamPF008088.0E-9675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471138.93E-247117IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSEAEELPRS IVRRVVKDKL SRCSEDGEIS VSKDALLAFS ESGRIFIHYL SATANDICKE  60
SKRQIINVED VFKALEETEF PEFLRPLKAS LEEFRKKNAG KKAAVSKGKD DEPRKKRKLE  120
GESPDKGEGS DKAELSDKGE DPDKGESDKG ESGDETNDLK E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A2e-13712218128DNA polymerase epsilon subunit D
5y27_A2e-13712218128DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194116RKKNAGKKAAVSKGKDDEPRKKR
2112118PRKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.526410.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G183100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904510.0BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237961.11e-109uncharacterized protein LOC100306382
TrEMBLC6SZ531e-108C6SZ53_SOYBN; Uncharacterized protein
STRINGGLYMA11G18960.11e-109(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-40nuclear factor Y, subunit B11