PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G186700.2.p
Common NameGLYMA_11G186700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 280aa    MW: 29898.8 Da    PI: 6.7251
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G186700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.5e-10187242560
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                          kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  ++     l 
  Glyma.11G186700.2.p 187 KRAKRILANRQSAARSKERKARYIQELEHKVQTLQTEATTLSAQLTLYQRDTTGLS 242
                          9*****************************************99988877666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-16183247IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.691185248IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11187238No hitNo description
PfamPF001702.4E-9187245IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-8187242No hitNo description
CDDcd147034.04E-23188237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MATQTQDPPS NPNPNPNATS ATPSSSFFFR AGGANGASVA PVAGSGESHS HHRRAQSEVS  60
FRLPEDMMDL SPSDPFNGGS STASFEEIGS EDDLFSTYID VEKLSGGANG AGRGGNGSDQ  120
SGYGNGAGTS GHNDGEKSSS AAAARPRHRH SSSVDGSTST CMFGEIMDAK KAMPPDKLAE  180
LWNIDPKRAK RILANRQSAA RSKERKARYI QELEHKVQTL QTEATTLSAQ LTLYQRDTTG  240
LSSENTELKL RLQAMEQQAQ LRDGNCYKVN SFLLLLMMH*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Strongly expressed in mature pollen. {ECO:0000269|PubMed:27896439}.
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G186700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-171AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028188001.10.0transcription factor RF2b-like
SwissprotO228731e-81BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A0R0HSE00.0A0A0R0HSE0_SOYBN; Uncharacterized protein
STRINGGLYMA11G30940.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.18e-72bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]