PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G188200.1.p
Common NameGLYMA_11G188200, LOC100793751
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 237aa    MW: 25969.1 Da    PI: 5.3365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G188200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.8e-1663113155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++   ++Wv+eIr+p     +  r+++g++ t+e+Aa+a++ a ++l g
  Glyma.11G188200.1.p  63 PVYRGVRQRN-GNKWVCEIREPI----KkSRVWVGTYPTPEMAARAHDVAVLALSG 113
                          68*****999.9*********72....35*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-1263111IPR001471AP2/ERF domain
PROSITE profilePS5103220.75864121IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-1964123IPR016177DNA-binding domain
SMARTSM003808.5E-2664127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2864123IPR001471AP2/ERF domain
PRINTSPR003673.0E-76576IPR001471AP2/ERF domain
CDDcd000181.74E-2765123No hitNo description
PRINTSPR003673.0E-787103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEFEIINESP ADSTSLSSSS VSPCTPPNPN LLCDSPNPQP NTNTNPSHKR KAGRKKFRET  60
RHPVYRGVRQ RNGNKWVCEI REPIKKSRVW VGTYPTPEMA ARAHDVAVLA LSGTSAKFNF  120
PDSVSLLPLA KSHSAVDIRE AAKAASIEAF IPNTAFSSSH NNSNFGENGN AEDTCLNIGM  180
HDDESETMFF DEEAVYNMPG LLDSMAEGLL ITPPSMKRAM DWDDIGCVID LTLWTN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G188200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539179.11e-177dehydration-responsive element-binding protein 1F
SwissprotA2WZI42e-52DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-52DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLK7LQ791e-175K7LQ79_SOYBN; Uncharacterized protein
STRINGGLYMA11G19341.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.17e-51C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]