PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G189500.1.p
Common NameGLYMA_11G189500, LOC100802220
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 290aa    MW: 30773.7 Da    PI: 4.5608
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G189500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05264286223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C  C+ksF++   L++H +  H
  Glyma.11G189500.1.p 264 SCASCKKSFTNEVGLQQHKKAkH 286
                          7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.448263289IPR007087Zinc finger, C2H2
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDAPMEFWGV EVKVGQTVTV DPMDPVDSYI HISQVALGEA KKEKPNESVV LYLKVGEQKI  60
VLGTLSRDGI PHLSLDLVLD SDSELSHTSK SASVFFCGYR VLTGGNNASD FSDSEEDEEL  120
ALEGQDNDEG AKVTKPSKPV PKIGAPAKTA DPKKDEGDDS DDESDDDLAG EDEFGSSDEM  180
DDDSDSDEES DEETPAKKVD QGKKRPNESA AKTPVSAKKA KTATPEKTNG KKNVHVATPH  240
PSKKGGKTPN STKGQSPSSA GQLSCASCKK SFTNEVGLQQ HKKAKHGGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.184900.0cotyledon| flower| hypocotyl| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G189500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5326180.0AF532618.1 Glycine max nucleolar histone deacetylase HD2-P39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591094.10.0histone deacetylase HDT1
SwissprotQ8LJS21e-171HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLI1LKW20.0I1LKW2_SOYBN; Uncharacterized protein
STRINGGLYMA11G19480.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-20histone deacetylase 2C