PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G198800.1.p
Common NameGLYMA_11G198800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 106aa    MW: 12070 Da    PI: 10.4098
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G198800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.4e-111295489
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3  4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                         +l +++  + ++l+lp  fa+   + +  + +tl+l + +g ++   + i++k  +++  +++Wk+F++  + k+gD++ F++ +++e
  Glyma.11G198800.1.p 12 QL-TKYKASGSQLSLPPGFAKFLwE-S--KFQTLSLINAEGlEEICHQRIHTKETKSIKTGRCWKKFCSKSRFKQGDTIKFEFGDKNE 95
                         44.778888899********76643.3..4569*****999877777777899999**************************754333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-9494IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-9595IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.7138104IPR003340B3 DNA binding domain
PfamPF023622.9E-81396IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGGPQVRIFR EQLTKYKASG SQLSLPPGFA KFLWESKFQT LSLINAEGLE EICHQRIHTK  60
ETKSIKTGRC WKKFCSKSRF KQGDTIKFEF GDKNENVAKV TKEIV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G198800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0R0HQN23e-71A0A0R0HQN2_SOYBN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2663022