PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G227200.6.p
Common NameGLYMA_11G227200, Glyma11g34930.7, LOC100788982
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 245aa    MW: 28067.7 Da    PI: 9.2461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G227200.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-1371115347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ +++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Glyma.11G227200.6.p  71 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKY 115
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.173121IPR017884SANT domain
PROSITE profilePS5129419.35364120IPR017930Myb domain
SuperFamilySSF466892.23E-1665120IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1767119IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.2E-1168114IPR009057Homeodomain-like
SMARTSM007175.6E-1168118IPR001005SANT/Myb domain
PfamPF002494.1E-1171115IPR001005SANT/Myb domain
CDDcd001675.78E-971115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MLPGKTVYDV IKQYRELEED VCEIEAGRIP VPGYPTSSLT LEMVDNQCYD ACRKKPATLR  60
SSDQERKKGV PWTEEEHRRF LMGLLKYGKG DWRNISRNFV VTKTPTQVAS HAQKYYIRQK  120
LSGGKDNKRR PSIHDITIVN LTSDQEKPLL FNDESHMTSE QQKLTSMPKV QLEWRINHHN  180
NGGSNYDMFV SPNSSGISSK TLKLQGQDFY ECAFHETYAK LKNTGFRTAS RDFNKEAIFG  240
IHAL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.212080.0seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G227200.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312000.0KT031200.1 Glycine max clone HN_CCL_92 MYB/HD-like transcription factor (Glyma11g34930.7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538449.10.0transcription factor DIVARICATA isoform X2
RefseqXP_006591377.10.0transcription factor DIVARICATA isoform X1
RefseqXP_014619719.10.0transcription factor DIVARICATA isoform X1
RefseqXP_014619721.10.0transcription factor DIVARICATA isoform X2
SwissprotQ8S9H77e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K2CTD40.0A0A0K2CTD4_SOYBN; MYB/HD-like transcription factor (Fragment)
TrEMBLI1LMN60.0I1LMN6_SOYBN; Uncharacterized protein
STRINGGLYMA11G34930.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-71MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]