PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G231300.2.p

Common Name

GLYMA_11G231300

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 233aa MW: 25636.7 Da PI: 9.6829

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G231300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.9e-12	44	90	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h ++E+rRRdriN +++Lr+l+Pk+ K++Ka+ L +++ +k+L Glyma.11G231300.2.p 44 KSHRQAEKRRRDRINAQLATLRKLIPKS-----DKMDKAALLGSVIDQVKDL 90 79***********************8.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.875	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-13	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-8	44	93	No hit	No description
Pfam	PF00010	3.8E-10	44	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-12	44	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	0.00696	139	174	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSVPTQQILP HHVTDAASLQ FGEFHSWSLP IEGAAEERAI SASKSHRQAE KRRRDRINAQ 60 LATLRKLIPK SDKMDKAALL GSVIDQVKDL KRKAMDVSRA FTVPTEIDEV SIHHDHVLQD 120 ESCTEKVNKL KDNIVIKASV CCDDRPELFP ELIQVLKGLR LTAVKADIAS VGGRIKSILV 180 LCSKDSESVC LATLKQSLKS AITKIASSSS MASSCPSRSK RQRFFLPSHC LQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36487	0.0	hypocotyl\| meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G231300.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT089476	0.0	BT089476.1 Soybean clone JCVI-FLGm-2E23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028196213.1	1e-166	transcription factor bHLH51-like
Swissprot	Q9XEF0	3e-48	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A0R0HL19	1e-166	A0A0R0HL19_SOYBN; Uncharacterized protein
STRING	GLYMA11G35480.1	1e-165	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	1e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G231300.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]