PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G231500.1.p
Common NameGLYMA_11G231500, LOC100305534
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 190aa    MW: 21064.1 Da    PI: 7.7369
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G231500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.33e-3916114199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+l+r+C ++C++apyf +++ kkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i  lq+++ +l
  Glyma.11G231500.1.p  16 SCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVEL 105
                          6***************************************************************************************** PP

               DUF260  91 kaelallke 99 
                          +++l+ +k+
  Glyma.11G231500.1.p 106 QHDLVIAKD 114
                          ****99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.25615116IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3816113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MLVRGMKGYE PRSSSSCAAC KLLKRRCIPN CIFAPYFRSD ECKKFAKVHK VFGASNVSKI  60
LIEVPEEQRE DTVNSLAYEA EARLRDPVYG CIGAIALLQR KMVELQHDLV IAKDRLARCH  120
AAATAAATTT TTTSIPSPDI LHANVSLPPF PDFYTSSSDF NDIFCHSSSS QLLSRHETVD  180
DFNQIPYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-44111186113LOB family transfactor Ramosa2.1
5ly0_B1e-44111186113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.518260.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G231500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0891790.0BT089179.1 Soybean clone JCVI-FLGm-1E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236716.11e-139uncharacterized protein LOC100305534
SwissprotQ9SRL85e-62LBD21_ARATH; LOB domain-containing protein 21
TrEMBLC6SVI61e-138C6SVI6_SOYBN; Uncharacterized protein
STRINGGLYMA11G35500.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.17e-64LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]