PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G246400.5.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 515aa    MW: 57763.7 Da    PI: 5.2369
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G246400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.32e-24128181155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.11G246400.5.p 128 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 181
                          68*******************.9*******************************8 PP
2Response_reg326.3e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Glyma.11G246400.5.p   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                          9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001569.88E-13162No hitNo description
PfamPF000727.1E-9157IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.2E-21191No hitNo description
PROSITE profilePS5011024.22162IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521729.39E-16176IPR011006CheY-like superfamily
Gene3DG3DSA:1.10.10.605.5E-28126186IPR009057Homeodomain-like
SuperFamilySSF466893.23E-17126185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-21128181IPR006447Myb domain, plants
PfamPF002491.5E-7130180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VLRKRIHEAK EFESFESFES IHLMRNGSEL SDDGNLFAVE DVTSTKKRKD ADNKHDDKEC  120
LDPSSTKKAR VVWSVDLHQK FVKAVNQIGF DKVGPKKILD LMNVPWLTRE NVASHLQKYR  180
LYLSRIQKEN DQRSSSSGLK HSDFPLKDMR SFGFQNSVNN QQQNDVAIDS YNHSDGSLQL  240
QNVETKSHEA DPKGIVSQST IAKKGRILTG NIADTNMRES LRVGLNQTFA PLESEENHAV  300
FDCSMPTPYT WTEVPHMQLK EEHKSIVHLE DSFNQLPLHG KQQQHIQVDQ SQSVASISSA  360
PLITEEEVAA CKEPKPLFAD YKNDYANSVS SIGNAVGTFP IQPGSLIMNG QSSEPISTTN  420
SGLKTQGYNN LSSISDLEIY QSNLLLGGEV ASAPSLDEDL HFYWLQGECY NNMNFSLQNI  480
GMSEYYDPGL ISEAPTHLYD SADYSVIDQG LFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17124186163ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G246400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537547.10.0two-component response regulator ARR11 isoform X2
RefseqXP_028196159.10.0two-component response regulator ARR11-like isoform X2
TrEMBLA0A0R0HLR60.0A0A0R0HLR6_SOYBN; Uncharacterized protein
STRINGGLYMA11G37480.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-81response regulator 11