PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G246400.6.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 534aa    MW: 59947.3 Da    PI: 5.3338
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G246400.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like248.3e-08128149122
              G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                          k+r++W+ +LH++Fv+av+q+G
  Glyma.11G246400.6.p 128 KARVVWSVDLHQKFVKAVNQIG 149
                          68******************96 PP
2G2-like38.33e-121732002855
              G2-like  28 tPktilelmkvkgLtlehvkSHLQkYRl 55 
                           Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Glyma.11G246400.6.p 173 GPKKILDLMNVPWLTRENVASHLQKYRL 200
                          5**************************8 PP
3Response_reg31.96.7e-1215653109
                          CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  Glyma.11G246400.6.p   1 MPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 56 
                          9************6644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.82E-16176IPR011006CheY-like superfamily
CDDcd001561.17E-12162No hitNo description
PfamPF000727.5E-9157IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.22162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23003.4E-21189No hitNo description
SuperFamilySSF466892.33E-13126204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-25126205IPR009057Homeodomain-like
PfamPF002491.1E-5130199IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-10171200IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MPDMDGFKLL EHVGLEMDLP VIMMSVDGET SRVMKGVQHG ACDYLLKPIR MKELRNIWQH  60
VLRKRIHEAK EFESFESFES IHLMRNGSEL SDDGNLFAVE DVTSTKKRKD ADNKHDDKEC  120
LDPSSTKKAR VVWSVDLHQK FVKAVNQIGF DNILYLSRTQ KIVTNHICLA EVGPKKILDL  180
MNVPWLTREN VASHLQKYRL YLSRIQKEND QRSSSSGLKH SDFPLKDMRS FGFQNSVNNQ  240
QQNDVAIDSY NHSDGSLQLQ NVETKSHEAD PKGIVSQSTI AKKGRILTGN IADTNMRESL  300
RVGLNQTFAP LESEENHAVF DCSMPTPYTW TEVPHMQLKE EHKSIVHLED SFNQLPLHGK  360
QQQHIQVDQS QSVASISSAP LITEEEVAAC KEPKPLFADY KNDYANSVSS IGNAVGTFPI  420
QPGSLIMNGQ SSEPISTTNS GLKTQGYNNL SSISDLEIYQ SNLLLGGEVA SAPSLDEDLH  480
FYWLQGECYN NMNFSLQNIG MSEYYDPGLI SEAPTHLYDS ADYSVIDQGL FIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G246400.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591475.10.0two-component response regulator ARR11 isoform X1
RefseqXP_028196158.10.0two-component response regulator ARR11-like isoform X1
TrEMBLA0A0R0HYP60.0A0A0R0HYP6_SOYBN; Uncharacterized protein
STRINGGLYMA11G37480.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-78response regulator 11