PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G247300.2.p

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 331aa MW: 38213.3 Da PI: 5.5823

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G247300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	86.6	3e-27	64	145	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Glyma.11G247300.2.p 64 WVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 145 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-4	55	125	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.455	56	120	IPR017877	Myb-like domain
SMART	SM00717	0.0011	60	122	IPR001005	SANT/Myb domain
CDD	cd12203	2.05E-28	62	127	No hit	No description
Pfam	PF13837	9.6E-22	63	147	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MYLSEKPRPI DFYKEEGARD MMIEVVSNGD LPPPPPPPPM ILGESSGEDP EVEIKAPKKR 60 AETWVQDETR SLIGLRREMD ALFNTSKSNK HLWEQISAKM REKGFDRSPT MCTDKWRNLL 120 KEFKKAKHQD RGSGSAKMSY YKEIDEILRE RSKNVQYKSP TPPPKVDSFM QFADKGIDDT 180 SISFGPVEGG ESQSCCGRVI SVKWGDYTRR IGIDGTPEAI KEAIRAAFRL RTKRTFWLED 240 EDQIIRSIDR EMPLGNYTLH IDEGMAIKLP LYDEPDHIPV HTEDKIFYTE DDFRDFLTRR 300 GWICLREFDS YRNIDNMDDL RPGAIYRGVS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	6e-51	58	143	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.43639	0.0	cotyledon\| flower\| root\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G247300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU285265	0.0	EU285265.1 Glycine max GT-1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538570.1	0.0	trihelix transcription factor GT-1 isoform X2
Refseq	XP_028197356.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	1e-153	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A0R0HLU2	0.0	A0A0R0HLU2_SOYBN; Uncharacterized protein
STRING	GLYMA11G37390.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.2	1e-163	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.11G247300.2.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]