PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G011500.1.p
Common NameGLYMA_12G011500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 145aa    MW: 16696.3 Da    PI: 10.5407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G011500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.91.4e-121573490
                 FAR1 34 vCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                         +C+keg+re++  +  k++++r+etr+gCka+++v+    ++ w+ tk++  HnHel+
  Glyma.12G011500.1.p  1 MCNKEGYREDKGLT-AKKQKRRPETRCGCKARFQVHIVLrSHLWHATKFKDFHNHELQ 57
                         5*********9999.9999****************9988799**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-9157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MCNKEGYRED KGLTAKKQKR RPETRCGCKA RFQVHIVLRS HLWHATKFKD FHNHELQIGM  60
HSVLVASHRK MDECDIMQMN RLRKAGIDTL DIYNSFASKL GGYLNVQFGK KKNMYNQISR  120
QRRLGGSDGA SAIEFLRVLT LNDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G011500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205882.15e-38protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0H9A71e-104A0A0R0H9A7_SOYBN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-07FAR1-related sequence 11