PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G012100.1.p
Common NameGLYMA_12G012100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 248aa    MW: 27740.3 Da    PI: 7.5034
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G012100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS122.16.7e-38362411219
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsP 89 
                          l++lL ec++  + g++++a+ +  +ls+laspdgd+mqR+a++f eALa  ++a++  ++ k l+  +t +  + e+  + klf++  P
  Glyma.12G012100.1.p  36 LINLLNECVKLTELGNFNAADVAFYHLSHLASPDGDSMQRVATCFIEALAYcQVAKNLRGVPKVLHLVKTLS--TPEQQLVKKLFFDFYP 123
                          6799*********************************************96378889999999997777763..667777899******* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                          ++k++h ++Nq+I ea +g++        ++  + W +L++ L   +   p++ iT++++    +ke le++g  L   A++l  pf+fn
  Glyma.12G012100.1.p 124 FIKIAHTITNQTIIEACKGKQP-------LMSLISWTNLIKCLKPSTPTCPKITITAIHE----KKEVLEKMGLHLGVEAQRLLFPFQFN 202
                          ********************97.......578899*********999999**********....9************************* PP

                 GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219
                          + v+++le+l++e+L +k+gE la+++vlqlh+ll+++ +
  Glyma.12G012100.1.p 203 P-VVSSLENLDPETLPIKKGEPLAISSVLQLHSLLASDDD 241
                          *.799*****************************987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.03310247IPR005202Transcription factor GRAS
PfamPF035142.3E-3536241IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQGVSRQPKL WTQVDSTSRG VRVQGMNWDD DERIRLINLL NECVKLTELG NFNAADVAFY  60
HLSHLASPDG DSMQRVATCF IEALAYCQVA KNLRGVPKVL HLVKTLSTPE QQLVKKLFFD  120
FYPFIKIAHT ITNQTIIEAC KGKQPLMSLI SWTNLIKCLK PSTPTCPKIT ITAIHEKKEV  180
LEKMGLHLGV EAQRLLFPFQ FNPVVSSLEN LDPETLPIKK GEPLAISSVL QLHSLLASDD  240
DDEMAKM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-153022613217Protein SCARECROW
5b3h_A3e-153022612216Protein SCARECROW
5b3h_D3e-153022612216Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G012100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195049.11e-116scarecrow-like protein 3
TrEMBLA0A0R0H9X90.0A0A0R0H9X9_SOYBN; Uncharacterized protein
STRINGGLYMA12G01470.21e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3600122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-50scarecrow-like 3