PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G022600.1.p
Common NameGLYMA_12G022600, LOC100815217
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 446aa    MW: 48961.6 Da    PI: 6.3231
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G022600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.38.6e-112734323374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAe+++ ++l  a+ lL ++ el+sp+g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++k
  Glyma.12G022600.1.p  73 GLLLQCAECIAMDNLDFANDLLPEIAELSSPYGTSPERVGAYFAQALQARVLSSCIGSYSPLTAKSVALTQSQRIFNAFQSYNSVSPLVK 162
                          58******************************************************************999******************* PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          fsh+taNqaI ++++ge+ vHiiD+di+qGlQWp L++ LasR+++  s+RiTg+gs    s+e l +tg+rLa+fA++lg+pfef ++ 
  Glyma.12G022600.1.p 163 FSHFTANQAIFQSLDGEDSVHIIDLDIMQGLQWPGLFHILASRSKKIRSVRITGFGS----SSELLDSTGRRLADFASSLGLPFEFFPVE 248
                          *********************************************************....99*************************87 PP

                 GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                           k  +  el++L v+p+Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l 
  Glyma.12G022600.1.p 249 GKIGSVTELSQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALG 331
                          77777779****************99..777777777777....**********************.899******************** PP

                 GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                           +l+++s er++vE++llg ei+n+va  g +r+ + + +e+W e l++aGF+pv l+ + a+qa+lll +++++gy++ +e++sl l W
  Glyma.12G022600.1.p 332 DGLGEDSLERHTVEQHLLGCEIRNIVAVGGPKRTGEVK-VERWGEELKRAGFGPVWLRGNPAAQANLLLGMFPWRGYTLLQENASLKLAW 420
                          ********************************998887.9************************************************** PP

                 GRAS 363 kdrpLvsvSaWr 374
                          kd +L+ +SaW+
  Glyma.12G022600.1.p 421 KDFSLLIASAWQ 432
                          ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.29245412IPR005202Transcription factor GRAS
PfamPF035143.0E-10973432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MLQSLVPRSP RTSNPNAMKT KRPVDASDLS PADEPSFKRT NFSADRTAAE AVEEQAFDPE  60
PHGGESTGLK LLGLLLQCAE CIAMDNLDFA NDLLPEIAEL SSPYGTSPER VGAYFAQALQ  120
ARVLSSCIGS YSPLTAKSVA LTQSQRIFNA FQSYNSVSPL VKFSHFTANQ AIFQSLDGED  180
SVHIIDLDIM QGLQWPGLFH ILASRSKKIR SVRITGFGSS SELLDSTGRR LADFASSLGL  240
PFEFFPVEGK IGSVTELSQL GVRPNEAIVV HWMHHCLYDI TGSDLGTLRL LTQLRPKLIT  300
TVEQDLSHAG SFLARFVEAL HYYSALFDAL GDGLGEDSLE RHTVEQHLLG CEIRNIVAVG  360
GPKRTGEVKV ERWGEELKRA GFGPVWLRGN PAAQANLLLG MFPWRGYTLL QENASLKLAW  420
KDFSLLIASA WQPQYKNICF IHSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1597743425381Protein SCARECROW
5b3h_A1e-1597743424380Protein SCARECROW
5b3h_D1e-1597743424380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G022600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311590.0KT031159.1 Glycine max clone HN_CCL_171 GRAS transcription factor (Glyma11g10220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540424.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLI1LPE80.0I1LPE8_SOYBN; Uncharacterized protein
STRINGGLYMA12G02530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Representative plantOGRP21831437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]