PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G022700.1.p
Common NameGLYMA_12G022700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 298aa    MW: 34334.5 Da    PI: 8.5721
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G022700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.91.5e-47161432128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPt+eel+++yLk+ v gkkl+  +vi  ++iy+++PwdLp  +k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d++
  Glyma.12G022700.1.p  16 LPGFRFHPTEEELLDFYLKNMVVGKKLRY-DVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRK 104
                          69**************************9.99***************8888899************************************ PP

                  NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++    ++ +gl+ktLvfy+grap+g ktdWvm+eyrl
  Glyma.12G022700.1.p 105 IVTLsdPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRL 143
                          *987666778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-5614161IPR003441NAC domain
PROSITE profilePS5100554.20115161IPR003441NAC domain
PfamPF023652.8E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATMEDMNNM SGEITLPGFR FHPTEEELLD FYLKNMVVGK KLRYDVIGFL NIYQHDPWDL  60
PGLAKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT  120
LVFYQGRAPR GCKTDWVMNE YRLPDNCKLP KEIVLCKIYR KATSLKVLEQ RAALEEEREM  180
KQMVGSPASP SSTDTMSFSS PQEEQNMPLP LLQHVLKKES ETEDMVVPKQ EKITNQLVLK  240
DTNKSTCGTS LQMPFGKEKL PDLQLPMLSD WTQDTFWAQL NSPWLQNFTP TNILNFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4541613168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.557480.0cotyledon| flower| leaf| meristem| pod| root| stem| vegetative bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G022700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287740.0DQ028774.1 Glycine max NAC domain protein NAC6 (NAC6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236900.20.0NAC domain protein NAC6
RefseqXP_028195212.10.0NAC domain-containing protein 22-like
SwissprotQ10S652e-97NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A445HJG30.0A0A445HJG3_GLYSO; NAC domain-containing protein 22
TrEMBLI1LPE90.0I1LPE9_SOYBN; Uncharacterized protein
STRINGGLYMA12G02540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62143251
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-106NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]