PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G048500.2.p
Common NameGLYMA_12G048500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 233aa    MW: 26939.5 Da    PI: 5.8647
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G048500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1811101197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          ffkv++p     s r+ +p+ f++  +++ + + +++l++ sgr+W vk   r  +++ ++ +GW+ F ++n L + Df+vFkl++r+ef
  Glyma.12G048500.2.p  11 FFKVFLP--ERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKT--RYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEF 96 
                          8899955..5555679*******77788888999****************..777778**************************998998 PP

                          ..EEEEE CS
                   B3  91 elvvkvf 97 
                            vv ++
  Glyma.12G048500.2.p  97 --VVLIL 101
                          ..88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-216103IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-197102IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-199101No hitNo description
PROSITE profilePS5086313.4229104IPR003340B3 DNA binding domain
PfamPF023628.7E-1611101IPR003340B3 DNA binding domain
SMARTSM010199.3E-1411104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTGAQRYPD FFKVFLPERH SERMLIPNAF VRLPQLQGRI PEDVILRNAS GRVWHVKTRY  60
VGEKLYFDDG WRAFHQENCL GQADFLVFKL ERRNEFVVLI LQLSTQCQKP LVKMEEEQAA  120
TQLVEEPDSS SDDDDEESGE EFSAGFNLQS HHRRACKRET ASSSNPNAED PLPEYVFDPQ  180
MCIHPENHFF KAKLYRTRPN ELHIPGNAIQ EFSLTLPEKI TLICCQPCQR KV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227800.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G048500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984200.0BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541119.21e-173B3 domain-containing protein REM20 isoform X1
RefseqXP_028194627.11e-173B3 domain-containing protein REM20-like isoform X1
RefseqXP_028194628.11e-173B3 domain-containing protein REM20-like isoform X1
TrEMBLA0A0R0HAW61e-173A0A0R0HAW6_SOYBN; Uncharacterized protein
TrEMBLA0A445HL331e-173A0A445HL33_GLYSO; Putative B3 domain-containing protein isoform A
STRINGGLYMA12G05241.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.17e-13B3 family protein