PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G048500.3.p
Common NameGLYMA_12G048500, LOC100810594
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 300aa    MW: 35100.7 Da    PI: 6.9286
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G048500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.4e-1614901697
                         EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         + lp ++ e++ +g  + + +++l++ sgr+W vk   r  +++ ++ +GW+ F ++n L + Df+vFkl++r+ef  vv ++
  Glyma.12G048500.3.p 14 VFLPERHSERMlQG--RIPEDVILRNASGRVWHVKT--RYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEF--VVLIL 90
                         56899998777643..46778***************..777778**************************998988..88776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.689193IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-15891IPR015300DNA-binding pseudobarrel domain
CDDcd100177.52E-16990No hitNo description
SMARTSM010191.8E-81193IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-171392IPR015300DNA-binding pseudobarrel domain
PfamPF023624.9E-131490IPR003340B3 DNA binding domain
SuperFamilySSF1019364.51E-8173295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-7174296IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MSTGAQRYPD FFKVFLPERH SERMLQGRIP EDVILRNASG RVWHVKTRYV GEKLYFDDGW  60
RAFHQENCLG QADFLVFKLE RRNEFVVLIL QLSTQCQKPL VKMEEEQAAT QLVEEPDSSS  120
DDDDEESGEE FSAGFNLQSH HRRACKRETA SSSNPNAEDP LPEYVFDPQM CIHPENHFFK  180
AKLYRTRPNE LHIPGNAIQE FSLTLPEKIT LICCQPCQRK DIPMNELGDY HHNLTPIRIK  240
YQEVTGRVCR WQDHRIYIKG WASFCRRNKI ERNDTCFCEV ISGEDQVVKT LRVHVARRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.227800.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G048500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0984200.0BT098420.1 Soybean clone JCVI-FLGm-16J3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592123.10.0B3 domain-containing protein REM20 isoform X2
RefseqXP_028194629.10.0B3 domain-containing protein REM20-like isoform X2
TrEMBLA0A0R0H2220.0A0A0R0H222_SOYBN; Uncharacterized protein
STRINGGLYMA12G05241.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06160.11e-19B3 family protein