PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G052000.1.p

Common Name

GLYMA_12G052000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 264aa MW: 29717.2 Da PI: 6.6412

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G052000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.6	4.9e-29	88	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + rt+vC+keg+r +k++ k r+raetr+gC+a+++v+k ++gkw+++k+++eH+H+l+p Glyma.12G052000.1.p 88 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTP 175 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-26	88	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MEVEIDGSVT VETVGNTAMG EVSSIADDNR EGGSSVEPND KQDQHDNMTQ DSSGGITIPT 60 AIPTVSVVSV EEPYVGQEFG SEAAAHAFYN AYATDVGFIV RVSKLSRSRR DGTAIGRTLV 120 CNKEGFRMAD KREKIVRQRA ETRVGCRAMI MVRKLSSGKW VIAKFVKEHT HPLTPGKGRR 180 DFYYEQYPTE QDKIRELSQQ LATEKKRSAA YKRHLELIFE QIEEQNENLS KKIQHIVDSV 240 KEMEAKEEHS RQWEGDGSQR RTY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G052000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094494	0.0	BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242403.2	0.0	FAR1 DNA-binding domain-containing protein
TrEMBL	A0A0R0HE97	0.0	A0A0R0HE97_SOYBN; Uncharacterized protein
STRING	GLYMA12G05600.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72
Representative plant	OGRP10299	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-89	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G052000.1.p