PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G052000.2.p

Common Name

GLYMA_12G052000

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 246aa MW: 27884.2 Da PI: 8.2193

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G052000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.8	4.2e-29	70	157	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF vr+sk ++s+r+g+ + rt+vC+keg+r +k++ k r+raetr+gC+a+++v+k ++gkw+++k+++eH+H+l+p Glyma.12G052000.2.p 70 FYNAYATDVGFIVRVSKLSRSRRDGTAIGRTLVCNKEGFRMADKRE--KIVRQRAETRVGCRAMIMVRKLSSGKWVIAKFVKEHTHPLTP 157 ****************************************9988..9************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-26	70	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGEVSSIADD NREGGSSVEP NDKQDQHDNM TQDSSGGITI PTAIPTVSVV SVEEPYVGQE 60 FGSEAAAHAF YNAYATDVGF IVRVSKLSRS RRDGTAIGRT LVCNKEGFRM ADKREKIVRQ 120 RAETRVGCRA MIMVRKLSSG KWVIAKFVKE HTHPLTPGKG RRDFYYEQYP TEQDKIRELS 180 QQLATEKKRS AAYKRHLELI FEQIEEQNEN LSKKIQHIVD SVKEMEAKEE HSRQWEGDGS 240 QRRTY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G052000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094494	0.0	BT094494.1 Soybean clone JCVI-FLGm-18B16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242403.2	0.0	FAR1 DNA-binding domain-containing protein
TrEMBL	A0A0R0HE97	0.0	A0A0R0HE97_SOYBN; Uncharacterized protein
STRING	GLYMA12G05600.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-89	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Glyma.12G052000.2.p