PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G055400.2.p
Common NameGLYMA_12G055400, LOC100803833
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 416aa    MW: 45602.4 Da    PI: 6.4413
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G055400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.3e-13349394655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L++l+P+     +k  + a++L +AveYIk+Lq
  Glyma.12G055400.2.p 349 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 394
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16346406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.87E-13347398No hitNo description
Gene3DG3DSA:4.10.280.107.3E-16348404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-14349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9349394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MESDLRQHPP MFLDHHHHQQ QMNSGLTRYR SAPSSYFSSI IDREFYEHVF NRPSSPETER  60
MLTRFVDSLG GGDAADADAE DSLANTQNPP TTVVAVKEEV NHQPQDVTSM NNEPLVLQQQ  120
QQQQSNNMNN YGSSGTQNFY QSTGRPPLPN QMKTGRGSSS SLIRHGSSPA GLFSNINIDT  180
GYAAVRGMGT MGAAAANNTT EEANFSPATR MKNATNFSSG LMSSRPGIGN KSNTQNNAEN  240
EGFAESQGNE FIPAGFPVGP WDDSAIMSDN MTGLKRFRDE DVKPFSGLNA PESQNETGGQ  300
QPSSSALAHQ LSLPNTSAEM AAIEKFLQLS DSVPCKIRAK RGCATHPRSI AERVRRTKIS  360
ERMRKLQDLV PNMDKQTNTA DMLDLAVEYI KDLQNQVEAL SDNRAKCTCL HKKQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.560010.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G055400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311180.0KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540708.10.0transcription factor bHLH122
RefseqXP_006592167.10.0transcription factor bHLH122
TrEMBLK7LT810.0K7LT81_SOYBN; Uncharacterized protein
STRINGGLYMA12G05930.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.11e-68bHLH family protein