PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G062000.2.p
Common NameGLYMA_12G062000, LOC100809160
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 654aa    MW: 74394.7 Da    PI: 5.3788
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G062000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.13e-1132816501373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ c + v ++d+++a++lL+++++++sp+gd++qRla+yf+++L+arl++  +++++ l++++++    +e l+a++ f  vsP+
  Glyma.12G062000.2.p 281 LRNLLMMCSQSVYANDKRAANELLEQIRQHSSPSGDALQRLAHYFANGLEARLVG--EGMFSFLKSKRST---AAEFLKAHQDFLSVSPF 365
                          689***************************************************9..9999999999888...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf+++ aN++I++a+ ++e+vHiiDf+i++G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg rLa++ ++  +pfe+
  Glyma.12G062000.2.p 366 KKFTYFFANKMIMKAAVKAETVHIIDFGIQYGFQWPMLIKFLSNREGGPPKLRITGIDFPQPGfrPTEKIEETGCRLANYSKRYSIPFEY 455
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n+++++++e++++e+L+++++E +aVn+ ++ ++l+de+ +++s+r++vL+l+++++P++++ +  +  +n++ F +rf eal ++s+++
  Glyma.12G062000.2.p 456 NAIASRNWETIQVEALNIETNELVAVNSLMKFENLMDETIEVDSPRNAVLHLIRKINPHIFTQCIVNGTYNAPFFTTRFREALFHFSTIY 545
                          **9999************************************************************************************ PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d  ++ +pre+e+r+ +Ere+lgre++nv+aceg+er+er et+++W++r ++aGFk++pl+e+  ++ +  lrk + + + ++e+++++
  Glyma.12G062000.2.p 546 DLCDTVIPRENEWRMLIEREVLGREAMNVIACEGSERVERPETYKQWQARNMKAGFKQLPLNEELLAKFRNELRKSYHRDFVLDEDKNWM 635
                          *****************************************************************************999********** PP

                 GRAS 359 vlgWkdrpLvsvSaW 373
                          ++gWk+r L++ ++W
  Glyma.12G062000.2.p 636 LQGWKGRILYASTCW 650
                          *************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.668255631IPR005202Transcription factor GRAS
PfamPF035141.0E-110281650IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MEANFPRRAH QFGEEEESIL YVSDSLGFAA TDPSLRDPSL EDNDFSETAK FINQILMEDN  60
VEQMPFYDSL NLQVTEKSFY NALTGNIPLS PNQHPLVLSP QAETTPTTSN SSNNSNHNFL  120
DENSLTVNHG LSNLDSSTAK LLAHNIFNDA DSLSQFRRGL EEATRFLPPG PKLVAGLDSK  180
GEEPINTLGE NSYGSKGRKN HEREDIDTRE EEERRSNKQS ALSLVDESDL SDAFDRVVLL  240
SVENVCNEHC SLQSETVKAV EPGGVKGRPK NQATNKETVD LRNLLMMCSQ SVYANDKRAA  300
NELLEQIRQH SSPSGDALQR LAHYFANGLE ARLVGEGMFS FLKSKRSTAA EFLKAHQDFL  360
SVSPFKKFTY FFANKMIMKA AVKAETVHII DFGIQYGFQW PMLIKFLSNR EGGPPKLRIT  420
GIDFPQPGFR PTEKIEETGC RLANYSKRYS IPFEYNAIAS RNWETIQVEA LNIETNELVA  480
VNSLMKFENL MDETIEVDSP RNAVLHLIRK INPHIFTQCI VNGTYNAPFF TTRFREALFH  540
FSTIYDLCDT VIPRENEWRM LIEREVLGRE AMNVIACEGS ERVERPETYK QWQARNMKAG  600
FKQLPLNEEL LAKFRNELRK SYHRDFVLDE DKNWMLQGWK GRILYASTCW VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-502646521379Protein SCARECROW
5b3h_D1e-502646521379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.230360.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G062000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028193525.10.0scarecrow-like protein 14 isoform X2
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLK7LTB60.0K7LTB6_SOYBN; Uncharacterized protein
STRINGGLYMA12G06640.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]