PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G062100.4.p
Common NameGLYMA_12G062100, LOC100813989
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 677aa    MW: 76754.4 Da    PI: 5.8059
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G062100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.23.8e-1112996731373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl c +av ++d ++a++lL+++++++sp gd+ qRla+yf+++L+arl++ ++++    +  ++++++ se l+a+++fs  sP+
  Glyma.12G062100.4.p 299 LRNLLLMCSQAVYASDIRAANELLKQIRQHSSPIGDASQRLAHYFANGLEARLVGDGTSTQGMYTFLSSKNNTFSELLKAYQVFSSSSPF 388
                          689****************************************************888888888888888888***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           kf++l  N +I++a++++e+vHiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p++g   +e++eetg+ La+++++ +vpfe+
  Glyma.12G062100.4.p 389 KKFAYLFENTMIMKAAASAETVHIIDFGILHGFQWPMLIRLLSNREGGPPKLRITGIEFPQPGfrPTEKIEETGRHLANYCKRYNVPFEY 478
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrllde.svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                          n++ ++++e+++le+L++ ++E +aV ++ + ++llde + +++s+r++vL+l+++++P++++++  + ++n++ F +rf eal +ysa+
  Glyma.12G062100.4.p 479 NAISSRNWETIQLEALKIASNELVAVYCHQRFENLLDEcTIEVNSPRNAVLHLIRKINPDIFTHSITNGSYNAPFFTTRFREALFHYSAI 568
                          **9999******************************984567777********************************************* PP

                 GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                           d  ++ ++re+e r +vErel grei+nv+aceg++r+er et+++W+ r ++aGFk++pl+e+ +++ ++ l++++ d + ++e++++
  Glyma.12G062100.4.p 569 SDKNDTVISRENERRLMVERELYGREIMNVIACEGSDRIERPETYKRWQVRNMKAGFKQLPLNEELMAKFRSKLKEYHRD-FVLDENNNW 657
                          ******************************************************************************66.********* PP

                 GRAS 358 lvlgWkdrpLvsvSaW 373
                          +++gWk+r L++ S+W
  Glyma.12G062100.4.p 658 MLQGWKGRILFASSCW 673
                          **************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.055273655IPR005202Transcription factor GRAS
PfamPF035141.3E-108299673IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MESNFPGAYH LFGEDQGIPY LSDSLGFPTM DPSSPEDNDF SETVKFISQI LMEENVDQRP  60
FYDSLTLRVT EKSFYDALTG NQPPFVLCSE AETNTITSNN SGSNFLNENS RELNIPSPLS  120
VSVSAIHFNP NPLSQPLPSV TVSDRVSVLD SSIAKLLAQN ISIEVDSVSK FRRGLEEATK  180
FLPPEPKLVT GLDLYREQAI NSSGDTSYRL NSRKNHGCEV RDTREEEEEE GGRSNKQSAL  240
SLVDETDLSD AFDQVLLHEE NLWNEHTCLQ SEAEKVEGPN GGKGGSDKKV RKKKKTVDLR  300
NLLLMCSQAV YASDIRAANE LLKQIRQHSS PIGDASQRLA HYFANGLEAR LVGDGTSTQG  360
MYTFLSSKNN TFSELLKAYQ VFSSSSPFKK FAYLFENTMI MKAAASAETV HIIDFGILHG  420
FQWPMLIRLL SNREGGPPKL RITGIEFPQP GFRPTEKIEE TGRHLANYCK RYNVPFEYNA  480
ISSRNWETIQ LEALKIASNE LVAVYCHQRF ENLLDECTIE VNSPRNAVLH LIRKINPDIF  540
THSITNGSYN APFFTTRFRE ALFHYSAISD KNDTVISREN ERRLMVEREL YGREIMNVIA  600
CEGSDRIERP ETYKRWQVRN MKAGFKQLPL NEELMAKFRS KLKEYHRDFV LDENNNWMLQ  660
GWKGRILFAS SCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-5230667526380Protein SCARECROW
5b3h_A9e-5230667525379Protein SCARECROW
5b3h_D9e-5230667525379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.217510.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G062100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028192342.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLK7LTB70.0K7LTB7_SOYBN; Uncharacterized protein
STRINGGLYMA12G06655.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]