PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G069100.2.p

Common Name

GLYMA_12G069100, LOC100500588

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 187aa MW: 20933.8 Da PI: 10.3911

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G069100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	32.1	2.4e-10	83	168	14	99
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ k + +P+ ri+ ++k ++ ++s ea + ++ e f+ ++t ++ + + +++ l +a +v++ +dfl d vp+ Glyma.12G069100.2.p 83 EEAKMNVFPMNRIRTMIKGEDPEMRVSQEALFAINNTVEKFLEQFTQDAYAFCAQDRKKCLSYDHLAHVVSKQRRYDFLSDFVPER 168 5667889*********8888888********************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.3E-15	89	168	IPR009072	Histone-fold
Pfam	PF00808	9.0E-15	90	152	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-23	90	167	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MASSNTPKPE NKKSTKKSEI SKAEKKKTKN AEIPKTDGKT KKNKEISQEE NKKKIKKAKL 60 SNGTSKQRDE GSKKGVAAEG NGEEAKMNVF PMNRIRTMIK GEDPEMRVSQ EALFAINNTV 120 EKFLEQFTQD AYAFCAQDRK KCLSYDHLAH VVSKQRRYDF LSDFVPERVK AEDALRERSA 180 AGKGGS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G069100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091529	0.0	BT091529.1 Soybean clone JCVI-FLGm-8O17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006591843.1	1e-134	uncharacterized protein LOC100500588 isoform X1
TrEMBL	I1LQX3	1e-133	I1LQX3_SOYBN; Uncharacterized protein
STRING	GLYMA12G07390.1	1e-121	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	3e-28	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Glyma.12G069100.2.p
Entrez Gene	100500588