PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G084700.1.p
Common NameGLYMA_12G084700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 300aa    MW: 31768.7 Da    PI: 4.5108
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G084700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05274296223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C  C+ksF++   L++H +  H
  Glyma.12G084700.1.p 274 SCASCKKSFTNEAGLQQHKKAkH 296
                          7*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.759273299IPR007087Zinc finger, C2H2
PROSITE patternPS000280275296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDAPMEFWGV EVKVGQTVTV DPMDPVDSYI HISQVALGEA KKDKPNEPVV LYLKVGEQKI  60
VLGTLSRDGI PHLSLDLVLD SDSELSHTSK SASVFFCGYK VLTGNDNASD FSDSSEEDEE  120
LALEGQDNGK PELKAEGAKV TKPSKSIPKI GAPAKAADPK KDEDDDSDDE SDDDLAGEDE  180
SGSSDEMDDD SNSEEESDGD DEETPAKKVD QGKKRPNESA AKTPISAKKA KTATPEKTDG  240
KKSVHVATPH PSKKGGKTPN STKGQTPNSA GQLSCASCKK SFTNEAGLQQ HKKAKHGGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.590.0meristem| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO225971550.0
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G084700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5326180.0AF532618.1 Glycine max nucleolar histone deacetylase HD2-P39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235884.10.0histone deacetylase HDT1
SwissprotQ8LJS20.0HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLI1LRC20.0I1LRC2_SOYBN; Uncharacterized protein
STRINGGLYMA12G09000.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-22histone deacetylase 2C