PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G086200.1.p
Common NameGLYMA_12G086200, LOC100810401
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 230aa    MW: 25371.6 Da    PI: 6.354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G086200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.4e-1764114155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  r++Wv+eIr+p     +  r+++g++ t+e+Aa+a++ a ++l g
  Glyma.12G086200.1.p  64 PVYRGVRQRN-RNKWVCEIREPI----KkSRIWVGTYPTPEMAARAHDVAVLALSG 114
                          68*****999.8*********72....35*********************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1264112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2865124IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-2065124IPR016177DNA-binding domain
PROSITE profilePS5103220.48165122IPR001471AP2/ERF domain
SMARTSM003803.4E-2665128IPR001471AP2/ERF domain
CDDcd000187.54E-2866124No hitNo description
PRINTSPR003673.9E-76677IPR001471AP2/ERF domain
PRINTSPR003673.9E-788104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDFEIINESP DSTSLSSPSS LSPCTPPNSN PLSDSPNPQP SNIYTNPSHK RKAGRKKFRE  60
TRHPVYRGVR QRNRNKWVCE IREPIKKSRI WVGTYPTPEM AARAHDVAVL ALSGTSANFN  120
FPDSVSLLPL AKSRSAVDIR EAAKATTTAE AFIPNTVFAC SHKNAEDTCL NIGMHDDGSE  180
MFFDEEAVYN MPGLLDSMAE GLLITPPSMK RAMDWDDIGC VIDLTLWTN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G086200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150392e-89AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540786.11e-171dehydration-responsive element-binding protein 1F
RefseqXP_028192481.11e-171dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI48e-50DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z58e-50DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLI1LRD31e-170I1LRD3_SOYBN; Uncharacterized protein
STRINGGLYMA12G09130.11e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.17e-49C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]