PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G088400.1.p
Common NameLOC100802773
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 324aa    MW: 36983.7 Da    PI: 7.8173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G088400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05159178120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + C++C+k+F+r  n++ H+
  Glyma.12G088400.1.p 159 FACSICSKTFNRYNNMQMHM 178
                          78*****************9 PP
2zf-C2H216.13.1e-05243265123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk+F  k + ++H +++
  Glyma.12G088400.1.p 243 FMCRKCGKTFAVKGDWRTHEKNC 265
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-5150182No hitNo description
SMARTSM003550.17159181IPR015880Zinc finger, C2H2-like
PfamPF139122.3E-4159178IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45159186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5159178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SMARTSM00355190206238IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.39E-6229263No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6239263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035535243263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGLMECNVED NKNLYLHAPT FIEWLKPCSS PNSYLNNSNT ISYSSSSSPS SSSFSLTQNE  60
FVQETIQFLP ILSEKASKDE DQSFEVKEEK VEQVTVALHI GLPDSNKGHA DEVDEKMIFH  120
VKEEEESSKR SFHGCSFNNQ ERRFWIPTPA QILVGPMQFA CSICSKTFNR YNNMQMHMWG  180
HGSEFRKGPD SLKGTQPAAM LRLPCYCCAQ GCKNNINHPR AKPLKDFRTL QTHYKRKHGT  240
KPFMCRKCGK TFAVKGDWRT HEKNCGKLWY CTCGSDFKHK RSLKDHIRSF GKGHNPHPPF  300
EAFEDEKECI TGSDEDEVNA HHT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366240.0leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G088400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959320.0BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241401.10.0uncharacterized protein LOC100802773
RefseqXP_028193091.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-123ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A445HNP60.0A0A445HNP6_GLYSO; Zinc finger protein WIP3
TrEMBLC6TEB10.0C6TEB1_SOYBN; Uncharacterized protein
STRINGGLYMA12G09400.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-117WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]