PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G088700.9.p
Common NameGLYMA_12G088700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 356aa    MW: 39667.2 Da    PI: 7.2762
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G088700.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.7e-115293445
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                          k  rr+++NReAAr+sR+RKka++++Le    +L+   ++L
  Glyma.12G088700.9.p 52 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTHLEQDL 93
                         6889*************************8777776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.9E-849125IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0945195IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-85195No hitNo description
PfamPF001703.7E-85294IPR004827Basic-leucine zipper domain
CDDcd147083.08E-2153103No hitNo description
SuperFamilySSF579594.9E-75396No hitNo description
PROSITE patternPS0003605671IPR004827Basic-leucine zipper domain
PfamPF141446.6E-28133208IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MADKDAFCYP YHVDDCTSPQ ENLPNKGPSH SEMLPKNSRK GAGSTSEKPL DAKTLRRLAQ  60
NREAARKSRL RKKAYVQQLE SSRLKLTHLE QDLQRARSQG VFMGCGGAGG SLSSGAAMFD  120
MEYARWLEDD QRHMMELRSG LQVPLPDGEL RVIVDGYLSH YDEVFRLKGV AVKTDVFHLI  180
NGMWTSPAER CFLWIGGFKP SELITMLIPQ LEPLVEQQIM GIHGLRHSLV QAEEALTQGL  240
EQLQQSLVDT IAGSPVADGV QQMVAAMGKL GNLEGFVSQA DNLRQITLHQ LCRLLTVRQA  300
ARCFLVIGEY YGRLRALSSL WASRPRETLI SDDNSCQTTT ELQMVQSSQN HFSSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.66420.0hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G088700.9.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150396e-91AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592325.10.0transcription factor TGA9 isoform X4
RefseqXP_014620106.10.0transcription factor TGA9 isoform X3
SwissprotQ93XM61e-174TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A0R0H3810.0A0A0R0H381_SOYBN; Uncharacterized protein
STRINGGLYMA12G09430.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-169bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]