PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G089400.1.p
Common NameGLYMA_12G089400, LOC100819488
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YB
Protein Properties Length: 152aa    MW: 16965 Da    PI: 5.2255
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G089400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB32.12.7e-10799895
                NF-YB  8 lPianvsrimkkvlP...ana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                         lP + + r++k  l    +++   +skd      e    fi ++++ a+d c++ kr+ in ++++ al +  f ++v plk+ l+++r+ +
  Glyma.12G089400.1.p  7 LPRSIMRRVVKYKLSrcsEDGeiSVSKDGLLAFSESGRIFIHYLSATANDICKESKRQIINVENVFKALEETEFPEFVCPLKASLEEFRKKN 98
                         666666677776664221334114567777888999999**************************************************876 PP

                NF-YB 95 g 95
                         +
  Glyma.12G089400.1.p 99 A 99
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.0E-283139IPR009072Histone-fold
SuperFamilySSF471131.07E-197128IPR009072Histone-fold
PfamPF008081.2E-52775IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSEAEELPRS IMRRVVKYKL SRCSEDGEIS VSKDGLLAFS ESGRIFIHYL SATANDICKE  60
SKRQIINVEN VFKALEETEF PEFVCPLKAS LEEFRKKNAR KKVVVSKGKE DEPKKKRKLE  120
GESSDKGEGS EKGEDNDKGE DSDKGVSGDD Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199117RKKVVVSKGKEDEPKKKRK
2112118PKKKRKL
3113118KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.526411e-161flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G089400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904511e-159BT090451.1 Soybean clone JCVI-FLGm-4D13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540799.11e-103DNA polymerase epsilon subunit 3
TrEMBLI1LRH01e-102I1LRH0_SOYBN; Uncharacterized protein
STRINGGLYMA12G09520.11e-103(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-37nuclear factor Y, subunit B11