PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.12G091200.1.p

Common Name

GLYMA_12G091200, LOC100808618

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 249aa MW: 28439 Da PI: 7.2042

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.12G091200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	138.1	5.6e-43	6	140	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 ppGfrF Pt+eelv +yL++k+eg++ + +++vi+ +di+ vePw+Lp+ +++++++w+fFs+ ++++++g r++r+t+ gyW Glyma.12G091200.1.p 6 PPGFRFFPTEEELVGFYLHNKLEGQRnaiaIAIDRVIPVIDINGVEPWNLPTlageLCRGDTEQWFFFSPGQERETRGGRPSRTTACGYW 95 9***********************8877777779***********545654445777*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+ v+s++++++g+kk++vfykg+ap g+kt+W m+eyr+ Glyma.12G091200.1.p 96 KATGSPCYVYSSHNKVIGVKKSMVFYKGKAPMGTKTKWKMNEYRA 140 *****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.15E-45	4	164	IPR003441	NAC domain
PROSITE profile	PS51005	44.533	5	166	IPR003441	NAC domain
Pfam	PF02365	2.3E-23	6	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEEDYPPGFR FFPTEEELVG FYLHNKLEGQ RNAIAIAIDR VIPVIDINGV EPWNLPTLAG 60 ELCRGDTEQW FFFSPGQERE TRGGRPSRTT ACGYWKATGS PCYVYSSHNK VIGVKKSMVF 120 YKGKAPMGTK TKWKMNEYRA IHVPSQSTPA TLHLTCEFSL CRVYVISGSF RAFDRRPLEK 180 EGAESRVHRI ENNFGGARAH QTCPHSQMLE AGESSITKWD VNNNNNNNNG FQLQEPVWEL 240 EWEHFNWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	6	164	18	163	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	6	164	18	163	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	6	164	18	163	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	6	164	18	163	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	6	164	21	166	NAC domain-containing protein 19
3swm_B	1e-32	6	164	21	166	NAC domain-containing protein 19
3swm_C	1e-32	6	164	21	166	NAC domain-containing protein 19
3swm_D	1e-32	6	164	21	166	NAC domain-containing protein 19
3swp_A	1e-32	6	164	21	166	NAC domain-containing protein 19
3swp_B	1e-32	6	164	21	166	NAC domain-containing protein 19
3swp_C	1e-32	6	164	21	166	NAC domain-containing protein 19
3swp_D	1e-32	6	164	21	166	NAC domain-containing protein 19
4dul_A	1e-32	6	164	18	163	NAC domain-containing protein 19
4dul_B	1e-32	6	164	18	163	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.18780	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.12G091200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539837.1	0.0	NAC domain-containing protein 90 isoform X1
Swissprot	Q9FMR3	7e-76	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	I1LRI3	0.0	I1LRI3_SOYBN; Uncharacterized protein
STRING	GLYMA12G09670.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123
Representative plant	OGRP2278	11	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	9e-77	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Glyma.12G091200.1.p
Entrez Gene	100808618

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]