PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G105400.1.p
Common NameGLYMA_12G105400, LOC100782270
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 235aa    MW: 27242.2 Da    PI: 6.7928
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd++l  +v+++G ++W+  ++  g+ R++k+c++rw +yl
  Glyma.12G105400.1.p 14 KGAWSEEEDKRLMAYVERHGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                         79********************************************97 PP
2Myb_DNA-binding55.61.2e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T+ E+++++d++k++G++ W++Ia+ ++ gRt++++k++w++ 
  Glyma.12G105400.1.p  67 RGNYTQKEEQIIKDLHKKHGNK-WSLIAENLP-GRTDNEIKNYWHSN 111
                          899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-24864IPR009057Homeodomain-like
PROSITE profilePS5129418.174961IPR017930Myb domain
SuperFamilySSF466893.49E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002495.6E-161461IPR001005SANT/Myb domain
CDDcd001673.17E-91661No hitNo description
PROSITE profilePS5129425.46862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2565114IPR009057Homeodomain-like
SMARTSM007179.2E-1766114IPR001005SANT/Myb domain
PfamPF002499.0E-1667111IPR001005SANT/Myb domain
CDDcd001676.08E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MVRAPYFDKN GIKKGAWSEE EDKRLMAYVE RHGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQIIKD LHKKHGNKWS LIAENLPGRT DNEIKNYWHS NLKKFLKGNE  120
NTPCDDDDEL KSTECKEFER SMNKAHSADS HHILESSVSI SSETSYTEGN SPSFSSSHTT  180
ESSTLSKEED SVVSWQTMDV LSSNFWTEPF ISENALNQDY FPISSYGTEP FFLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.249880.0flower| leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G105400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540874.11e-176transcription factor MYB8
TrEMBLI1LRW21e-175I1LRW2_SOYBN; Uncharacterized protein
STRINGGLYMA12G11490.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-53myb domain protein 9