PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G114800.1.p
Common NameGLYMA_12G114800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 142aa    MW: 16554.4 Da    PI: 8.8681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G114800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071445132
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                         +g+WT eEd++l+ ++   G  +W+ +++ + 
  Glyma.12G114800.1.p 14 KGPWTVEEDKKLISLILNNGQCCWRVVPKLLC 45
                         79*************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-9653IPR009057Homeodomain-like
SuperFamilySSF466891.64E-7858IPR009057Homeodomain-like
PROSITE profilePS500906.725952IPR017877Myb-like domain
PfamPF002491.6E-61445IPR001005SANT/Myb domain
CDDcd001670.001281644No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRKPFCAKV GLKKGPWTVE EDKKLISLIL NNGQCCWRVV PKLLCITDFN SRDYYVNIRK  60
EMFMQVAHLE RTGHLLDNEK QPGLLLVHLH PSNCLDHKPE LMDVAPHYYD LSNFPQCEAK  120
CVLERLYKKR EKEKEEAKSR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id1_V6e-2447134678791Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.102242e-54cotyledon| leaf| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in pre-mRNA splicing. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G114800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958317e-39BT095831.1 Soybean clone JCVI-FLGm-19P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514382.14e-40probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
RefseqXP_015933045.14e-40probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
RefseqXP_016166264.14e-40probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
RefseqXP_025610441.14e-40probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
RefseqXP_025668376.14e-40probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
RefseqXP_028183178.17e-41probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
SwissprotO228996e-37PRP43_ARATH; Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
TrEMBLK7LU921e-100K7LU92_SOYBN; Uncharacterized protein
STRINGGLYMA12G12990.11e-101(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.18e-20myb domain protein 20
Publications ? help Back to Top
  1. Iida K, et al.
    Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences.
    Nucleic Acids Res., 2004. 32(17): p. 5096-103
    [PMID:15452276]
  2. Herr AJ,Molnàr A,Jones A,Baulcombe DC
    Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(41): p. 14994-5001
    [PMID:17008405]
  3. Xu R,Zhang S,Huang J,Zheng C
    Genome-wide comparative in silico analysis of the RNA helicase gene family in Zea mays and Glycine max: a comparison with Arabidopsis and Oryza sativa.
    PLoS ONE, 2013. 8(11): p. e78982
    [PMID:24265739]