PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G117000.1.p
Common NameGLYMA_12G117000, LOC100775465
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 206aa    MW: 23253.2 Da    PI: 10.3956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G117000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-202271255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp   gk++r++lg+f+tae+Aa+a++ a+++++g
  Glyma.12G117000.1.p 22 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEDAARAYDVAARNFRG 71
                         69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-312279IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-222280IPR016177DNA-binding domain
SMARTSM003801.5E-382285IPR001471AP2/ERF domain
PROSITE profilePS5103223.4062279IPR001471AP2/ERF domain
PfamPF008472.5E-132271IPR001471AP2/ERF domain
CDDcd000182.05E-302279No hitNo description
PRINTSPR003675.4E-112334IPR001471AP2/ERF domain
PRINTSPR003675.4E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAKEKKNLSN KNKKPSNADE VHFRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAEDAAR  60
AYDVAARNFR GPKAKNNFPF LPDNNTNVNL NKKNNNVNVK SDSPSQSSTV ESSTPEREFT  120
RRAAPAAMDR FPFLPIQQQI LVTHPVAPMR PVYFLDRAHF MTQPFPLRFE PGPVQSDSDS  180
SSVVVDCQPK RELNLDLNLA PPNEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-212280261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-212280564ATERF1
3gcc_A4e-212280564ATERF1
5wx9_A1e-201088281Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.319360.0cotyledon| epicotyl| leaf| pod| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G117000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310800.0KT031080.1 Glycine max clone HN_CCL_133 AP2-EREBP transcription factor (Glyma06g44430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014620342.11e-150ethylene-responsive transcription factor 9
SwissprotQ9FE671e-47ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0R0HB501e-148A0A0R0HB50_SOYBN; Uncharacterized protein
STRINGGLYMA12G13315.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-32erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]