PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G118000.1.p
Common NameGLYMA_12G118000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 228aa    MW: 26380.4 Da    PI: 7.7766
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G118000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like62.48.9e-20130186155
              G2-like   1 kprlrWtpeLHe.rFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k rl+W  eLH+ +Fv+av+ +  G +kA Pk+ le+m+++gLt ehv+S LQkYRl
  Glyma.12G118000.1.p 130 KSRLVWQGELHHhQFVKAVNVMQvGLDKAQPKRTLEVMNIPGLTEEHVASRLQKYRL 186
                          68********7527****996533********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.5E-61187No hitNo description
SuperFamilySSF521722.42E-1115109IPR011006CheY-like superfamily
SuperFamilySSF466899.32E-11128190IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-20129190IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-14130187IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAKCPTEVSF QFPADLRILA IDDDANIIER LICPYYILYN APTCSELCQK KKDCTDVILI  60
ETHMSNMDGY EFLQHVTKKI HVPAIAYGAC DYWIKPLHQN QFKIMWMWQH NSSNSQESDP  120
DVCYAPPGKK SRLVWQGELH HHQFVKAVNV MQVGLDKAQP KRTLEVMNIP GLTEEHVASR  180
LQKYRLNLKK SNKEVVQQDE MSLPNCIESR GRVGPFGRFD LDRFWRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G118000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352118e-77AC235211.1 Glycine max strain Williams 82 clone GM_WBb0019L21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627050.11e-62two-component response regulator ARR2
TrEMBLA0A0R0H4451e-172A0A0R0H445_SOYBN; Uncharacterized protein
TrEMBLA0A445HP271e-172A0A445HP27_GLYSO; Two-component response regulator ORR21
STRINGGLYMA19G06550.24e-62(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14524517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-24response regulator 2