PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G120700.1.p
Common NameGLYMA_12G120700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 213aa    MW: 24280.4 Da    PI: 9.0091
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G120700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.72.9e-3611109199
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++r+kC+++C+l pyfp++++++f +vhk+FG+sn++kl+k+++ee+r+++++sl++eA++r+rdP++G +g ++k+ ++++++
  Glyma.12G120700.1.p  11 ACAACKHQRKKCSENCILEPYFPSNRSREFYAVHKVFGVSNITKLVKNAKEEDRRKVVDSLIWEACCRQRDPIQGPYGEYTKVYNEYKKV 100
                          7****************************************************************************************9 PP

               DUF260  91 kaelallke 99 
                            e+++ ++
  Glyma.12G120700.1.p 101 LDEIKRFRS 109
                          999988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.75410111IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3411106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MQRNNSGMHP ACAACKHQRK KCSENCILEP YFPSNRSREF YAVHKVFGVS NITKLVKNAK  60
EEDRRKVVDS LIWEACCRQR DPIQGPYGEY TKVYNEYKKV LDEIKRFRSQ NQLLQIPSLG  120
FKSVQDLIAC NGTKGEHKAS VNNASNYLHG KKNGIIDTNI YNTYCSNYLL EFQNIRPEVV  180
IPFQQHSQPY YITGGSSVSD GGKVNGNNSD MID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-1941044104LOB family transfactor Ramosa2.1
5ly0_B9e-1941044104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G120700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-124AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980561.11e-144LOB domain-containing protein 2
TrEMBLA0A0R0H4Z31e-158A0A0R0H4Z3_SOYBN; Uncharacterized protein (Fragment)
TrEMBLA0A445HNY71e-158A0A445HNY7_GLYSO; LOB domain-containing protein 2 (Fragment)
STRINGGLYMA12G14101.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-39LOB domain-containing protein 2